extract.peakROI {MRMLinear} R Documentation

Exact ``regions of interested`` based on the given ion pair as targets.

Description

Usage

extract.peakROI(mzML, ionpairs,
    tolerance = "ppm:20",
    timeWindowSize = 5,
    baselineQuantile = 0.65,
    integratorTicks = 5000,
    peakAreaMethod = NetPeakSum,
    angleThreshold = 5,
    peakwidth = "8,30",
    rtshift = NULL,
    bsplineDensity = 100,
    bsplineDegree = 2,
    sn.threshold = 3,
    TPAFactors = NULL);

Arguments

mzML

A mzML raw data file. [as string]

ionpairs

MRM ion pairs. [as IonPair]

TPAFactors

Peak factors. [as list]

baselineQuantile#

-

integratorTicks%

-

peakAreaMethod

[as PeakAreaMethods]

Details

Authors

BioNovoGene

Value

this function returns data object of type IonTPA.

clr value class

Examples

[Package MRMLinear version 1.0.0.0 Index]