MRM.peaks {MRMLinear} R Documentation

Get MRM ions peaks data from a given raw data file

Description

Usage

MRM.peaks(mzML, ions,
    peakAreaMethod = NetPeakSum,
    tolerance = "ppm:20",
    timeWindowSize = 5,
    angleThreshold = 5,
    baselineQuantile = 0.65,
    rtshifts = NULL,
    TPAFactors = NULL,
    peakwidth = "8,30",
    sn.threshold = 3);

Arguments

mzML

the file path of the mzML raw data file. [as string]

ions

the ion pairs data list. [as IonPair]

peakAreaMethod

[as PeakAreaMethods]

tolerance$

-

timeWindowSize#

-

angleThreshold#

-

baselineQuantile#

-

rtshifts

[as list]

TPAFactors

[as list]

peakwidth

-

sn.threshold

[as double]

env

[as Environment]

Details

Authors

BioNovoGene

Value

this function returns data object of type DataSet.

clr value class

Examples

[Package MRMLinear version 1.0.0.0 Index]