AlignmentOutput {BioNovoGene.Analytical.MassSpectrometry.Math.Spectra.Xml}

.NET clr documentation

AlignmentOutput

Description

the spectrum similarity comparision result object

contains the score and spectrum fragment alignment details result data.

Declare

            
# namespace BioNovoGene.Analytical.MassSpectrometry.Math.Spectra.Xml
export class AlignmentOutput {
   alignment_str: string;
   alignments: SSM2MatrixFragment[];
   # the min value of AlignmentOutput.forward and AlignmentOutput.reverse
   cosine: double;
   # the spectrum entropy similarity
   entropy: double;
   # the forward cosine score
   forward: double;
   # the jaccard index between the fragment set of query vs subject
   jaccard: double;
   # get score mean result
   mean: double;
   mirror: double;
   nhits: integer;
   query: Meta;
   reference: Meta;
   # the reverse cosine score
   reverse: double;
}

        

.NET clr type reference tree

1. use by property member alignments: SSM2MatrixFragment
2. use by property member query: Meta
3. use by property member reference: Meta

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