TrIQ {MsImaging} R Documentation

Contrast optimization of mass spectrometry imaging(MSI) data

Description

visualization by threshold intensity quantization (TrIQ)

Usage

TrIQ(data,
    q = 0.6,
    levels = 100);

Arguments

data

A ms-imaging ion layer data or a numeric vector of the intensity data.

q

cutoff threshold of the intensity numeric vector. [as double]

env

[as Environment]

Details

this function works based on the TrIQThreshold clr module

Authors

BioNovoGene

Value

A signal intensity value range [min, max]

clr value class

Examples

[Package MsImaging version 1.0.0.0 Index]