metadna

require(mzkit); #' Metabolic Reaction Network-based Recursive Metabolite Annotation for Untargeted Metabolomics imports "metadna" from "mzDIA";

Metabolic Reaction Network-based Recursive Metabolite Annotation for Untargeted Metabolomics

.NET clr type export
metadna: Algorithm	implements of the metadna algorithm in VisualBasic language
obo_ontology: OBOFile	OBO file reader
metadna_infer: CandidateInfer

.NET clr function exports
as.data.frame.metadnaresult	MetaDNAResult: table output of the metaDNA infer annotation result
read.metadna.infer	Load network graph model from the kegg metaDNA infer network data.
reaction_class.table	load kegg reaction class data in table format from given file
metadna	Create an algorithm module for run metaDNA inferance
range	Configs the precursor adducts range for the metaDNA algorithm
load.kegg	Set kegg compound library
setLibrary
setNetworking
load.kegg_network	set the kegg reaction class data links for the compounds
load.ontology	load the ontology tree as the network graph for search
load.raw	set ms2 spectrum data for run the annotation
DIA.infer	apply of the metadna annotation workflow
as.seeds	create seeds from mgf file data
result.alignment	get result alignments raw data for data plots.
as.table	Extract the annotation result from metaDNA algorithm module as data table
as.graph
as.ticks
read.infer_details
annotationSet	Create the kegg compound ms1 annotation query engine.
kegg.library	load kegg compounds
kegg.network	load the kegg reaction class data.