run.Deconvolution(rawdata,
outputdir = './',
mzdiff = 0.001,
xic.mzdiff = 0.005,
peak.width = [30],
n.threads = 16,
filename = 'peaktable.csv');
rawdata
a directory path that contains the mzXML or mzML rawdata files.
outputdir
a directory path for save the peaktable result file and the temp cache files.
mzdiff
the mass tolerance error for create the mz bins from the ms1 rawdata, the XIC data is generated based on this parameter value
peak.width
the rt range of the peak data
n.threads
the cpu thread number for apply for the peak alignments when export peaktable data.
xic.mzdiff
the mass tolerance error for make extract of the xic data from all of the ms1 rawdata scatters.
filename
the save file name of the exports generated peaktable file.