Parse the pugview xml as the metabolite data object

pubchem_graphjson {mzkit}

R Documentation

Parse the pugview xml as the metabolite data object

Description

Usage

pubchem_graphjson(dataXml,
    process = NULL,
    extensionCache = './.cache/extdata/');

Arguments

dataXml

the xml content of the pugview data object

process

a callable function that used for additional object processing, example like attach a additional database cross reference id to the xrefs of the generated pugview metabolite data object

extensionCache

a cache dir for save the extension data of the current metabolite object, example as pathway query, reaction query, and reaction query. This parameter value also could be a filesystem wrapper object.

Authors

xieguigang

Value

A generated metabolite object that could be used for dump well formatted json

[Package mzkit version 3.2.56.56444 Index]